Supplementary MaterialsTABLE?S1? Donor information. range, and the corresponding names of the residues are shown as letters in squares. Download FIG?S1, PDF file, 0.1 MB. Copyright ? 2018 Zhao et al. This content is distributed under the terms of the Creative Commons Attribution 4.0 International license. FIG?S2? Biased T-cell cross-reactivities revealed by immunogenic peptides. Six individual peptides (P17, P18, P22, P23, P24, and P33) that led to immunogenicity changes were determined through IFN- ELISPOT assays (A to C and E to G). The corresponding sequences of each strain are shown in the tables in the panels below (D and H), and T-cell epitopes identified previously within the long peptides are marked in red letters. The dashes represent residues that are identical to those in the A(H1N1)/California/04/2009 virus, while residues in other strains that differ from those in the A(H1N1)/California/04/2009 are shown in letters. Download FIG?S2, PDF file, 0.3 MB. Copyright ? 2018 Zhao et al. This content is distributed under the terms of the Creative Commons Attribution 4.0 International license. FIG?S3? Clustering analysis of H1N1 stains and human-infecting avian influenza viruses. (A) Clustering analysis of H1N1 stains and human-infecting avian influenza viruses with human epitopes. A total of 266 CTL epitopes in IEDB (http://www.iedb.org/) were retrieved and then mapped to each strain (up to Antineoplaston A10 30 December 2016). These epitopes were mapped to the proteins of A/California/04/2009. Protein sequences of representative strains for H1N1, H5N1, H6N1, H7N9, and H9N2 had been downloaded through the GISAID EPIFLU data source (http://platform.gisaid.org/epi3/frontend), and peptides using the sequences were extracted as expected T-cell epitopes from the representative sequences. A/California/04/2009 was utilized as a research. The maximum-likelihood phylogenetic trees and shrubs of T-cell epitope sequences had been built using Molecular Evolutionary Genetics Evaluation MEGA6 software program. Different subtypes of influenza infections are denoted with different colours. The dark triangles indicate the five pathogen strains A (H1N1)/California/4/2009, A(H5N1)/Vietnam/1194/2004, A(H6N1)/Taiwan/2/2013, A(H7N9)/Anhui/1/2013, along with a(H9N2)/Hong Kong/1073/99 found in this research. (B) Maximum-likelihood tree of joint sequences of 122 mouse epitopes. Bootstrap ideals of over 70% are indicated on branches. Strains of H1N1, H5N1, H6N1, H7N9, and H9N2 are coloured as orange, reddish colored, green, blue, and grey, respectively. The size bar beneath the tree represents amount of substitutions per site. (C) Assessment of the 122 mouse epitopes within the 38 consultant strains. The columns stand for epitopes, as well as the rows stand for strains. The colour of every cell represents the amount of different residues of every epitope weighed against those of A(H1N1)/California/4/2009.The strains are grouped by subtypes, as well as the order of groups corresponds to the cluster order from the maximum-likelihood tree of joint sequences of 122 mouse epitopes. Rabbit Polyclonal to NCBP2 Download FIG?S3, PDF document, 0.2 MB. Copyright ? 2018 Zhao et al. This article is distributed beneath the conditions of the Innovative Commons Attribution 4.0 International permit. TABLE?S2? Human being epitopes used. Download TABLE?S2, DOCX document, 0.1 MB. Copyright ? 2018 Zhao et al. This article is distributed beneath Antineoplaston A10 the conditions of the Innovative Commons Attribution 4.0 International permit. TABLE?S3? Eleven crucial epitopes demonstrated conservation in H1 and H5 subtypes. Download TABLE?S3, DOCX file, 0.1 MB. Copyright ? 2018 Zhao et al. This content is distributed under the terms of the Creative Commons Attribution 4.0 International license. TABLE?S4? Data collection and refinement statistics. Download TABLE?S4, DOCX file, 0.02 MB. Copyright ? 2018 Zhao et al. This Antineoplaston A10 Antineoplaston A10 content is distributed under the terms of the Creative Commons Attribution 4.0 International license. TABLE?S5? M1 overlapping peptide pools of influenza viruses. Download TABLE?S5, DOCX file, 0.02 MB. Copyright ? 2018 Zhao et al. This content is distributed under the terms of the Creative Commons Attribution 4.0 International license. TABLE?S6? Mouse epitopes in use. Download TABLE?S6, DOCX file, 0.1 MB. Copyright ? 2018 Zhao et al. This content is distributed beneath the conditions of the Innovative.
Categories